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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1424274_1425022_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1424274 - 1425022
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
CGTATTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGACACGTAATT
Flanking Amino Acid:
DKEVIQLKERDRKRQYDLLK
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.2
37.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
79.3
0.66
0.9
73.1
37.2
Minor 5ss
32.8
-2
2.8
31.2
42.7
Minor BPS
47.9
-0
2.1
68.42
42

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532