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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14246736_14247989_R

Intron Information:

Intron Rank:
151162
Intron Class:
major
Intron Phase:
Intron Coordinates:
14246736 - 14247989
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATGAGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAATCATTATGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.9
0.49
1
66.4
44.6
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
48.1
-0.1
2.1
62.88
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028839
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046684
14239194 - 14248067
8874