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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1425107_1425252_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1425107 - 1425252
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAGT
5'SS Class:
strong_major
3'SS Sequence:
AACTATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTGTGTAAACT
Flanking Amino Acid:
ANVLRRKAEEAAAANKRLKD
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.4
43.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.4
0.59
0.9
69.6
40.4
Minor 5ss
32.6
-2
3.5
48.3
47.5
Minor BPS
49.6
0.05
2.4
78.66
44.1

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532