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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14255429_14256285_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14255429 - 14256285
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTGTTAATG
Flanking Amino Acid:
KGRTADGSLQDELC*
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
67.6
0.4
0.9
62.3
33.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
53.5
-0
2.2
66.07
42.7

Associated Gene:

Gene:
FMR1
Ensembl Gene ID:
ENSAPLG00000003811
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003949
14255288 - 14284343
29056