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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1425749_1426137_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1425749 - 1426137
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TGTAATTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ATTGCTGTAATT
Flanking Amino Acid:
SGENPPPKLRRRTYSITDLK
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
60.8
44.4
Major BPS
74.1
0.6
1
69
38.9
Major PPT
73.6
0.53
0.9
70.6
40.7
Minor 5ss
29.4
-2.4
3.3
30.1
42.9
Minor BPS
55.8
0.26
2.1
77.48
40

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532