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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1429112_1429202_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1429112 - 1429202
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGATC
5'SS Class:
major
3'SS Sequence:
TCCCTCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCCCTCCTAACA
Flanking Amino Acid:
LLQENDTLKQKLLLLQLASG
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
69.7
40.9
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
73.8
0.54
0.9
69.1
30.1
Minor 5ss
35.5
-1.6
3.5
51.2
45.6
Minor BPS
55.3
0.16
1.7
64.87
41.6

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008640
1413056 - 1436587
23532
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966