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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1430183_1432382_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1430183 - 1432382
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AGTGCTTCAAAA
Flanking Amino Acid:
VKGGKKSMMGNATVCEDQTR
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.7
0.58
0.8
72.9
32
Minor 5ss
40.1
-1.1
3.1
49.7
46.1
Minor BPS
49.3
-0
1.7
60.15
39.5

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966