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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1432506_1433181_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1432506 - 1433181
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
ACTTTCCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTTCCTCACTT
Flanking Amino Acid:
QPVCITPTAKVLKDITDQEM
Intron Amino Acid Position:
1203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
69.6
0.44
1
65.8
35.5
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
61.4
0.44
1.9
79.83
42.7

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532