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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1433336_1436261_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1433336 - 1436261
Intron Length:
2926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTACCC
5'SS Class:
weak_major
3'SS Sequence:
CATTATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTATAT
Flanking Amino Acid:
MLISNTSFFSGMENSV*
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.3
48.3
40.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
73
0.52
0.9
66.9
38.6
Minor 5ss
28.3
-2.5
3
35.6
40.5
Minor BPS
49.6
0.05
2
73.14
42.7

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008640
1413056 - 1436587
23532