About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14336627_14343700_F

Intron Information:

Intron Rank:
129698
Intron Class:
major
Intron Phase:
Intron Coordinates:
14336627 - 14343700
Intron Length:
7074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.9
0.6
0.9
73.2
36.1
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
50.6
0.1
2
76.65
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019800
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023403
14307819 - 14396805
88987