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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14336627_14396443_F

Intron Information:

Intron Rank:
129701
Intron Class:
major
Intron Phase:
Intron Coordinates:
14336627 - 14396443
Intron Length:
59817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.7
0.83
0.7
81.5
29.2
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
60.7
0.41
1.6
76.38
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019800
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034439
14307819 - 14396805
88987