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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1438541_1438691_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1438541 - 1438691
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
IPSSQTTVKAATPTTPTVQN
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
TAF9
Ensembl Gene ID:
ENSAPLG00000020242
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025152
1437688 - 1441007
3320