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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1439091_1439580_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1439091 - 1439580
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGATGTTAAACC
Flanking Amino Acid:
NYRLKSLQKKVSSSAGRITV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.3
0.68
0.8
74.8
33.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.4
-0
2.1
63.51
42.2

Associated Gene:

Gene:
TAF9
Ensembl Gene ID:
ENSAPLG00000020242
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025152
1437688 - 1441007
3320