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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14399214_14431164_F

Intron Information:

Intron Rank:
137134
Intron Class:
major
Intron Phase:
Intron Coordinates:
14399214 - 14431164
Intron Length:
31951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.3
0.75
0.8
77.7
35
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
64.6
0.54
1.7
81.78
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023860
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046490
14397963 - 14431180
33218