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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1440243_1440335_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1440243 - 1440335
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
CTGTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
TGAGCCCGAGCC
Flanking Amino Acid:
SPKSAPKDAQVMAQILKDMG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
71.8
0.49
0.9
65.6
36.1
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
43
-0.5
2
54.21
42.8

Associated Gene:

Gene:
TAF9
Ensembl Gene ID:
ENSAPLG00000020242
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025152
1437688 - 1441007
3320