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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14469200_14470086_F

Intron Information:

Intron Rank:
138320
Intron Class:
major
Intron Phase:
Intron Coordinates:
14469200 - 14470086
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTCATTTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.5
32.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
85
0.79
0.8
79.8
32.1
Minor 5ss
30.4
-2.2
3.2
31.7
42.6
Minor BPS
50.6
-0.1
1.5
55.95
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024421
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023009
14468771 - 14470726
1956