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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1449735_1450668_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1449735 - 1450668
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CCCAATTAAAGT
Flanking Amino Acid:
QLAAGREFDQVYKGPETSFR
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.6
0.55
0.9
69.2
37
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
39.8
-0.6
2
48.22
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120