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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1450782_1450993_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1450782 - 1450993
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTAGCACCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTCTAGCA
Flanking Amino Acid:
TTKSPPASLKANQLEENTYE
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
51.3
0.03
1
49.1
33.2
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
56.7
0.21
1.9
75.44
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120