About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14542713_14572161_F

Intron Information:

Intron Rank:
149230
Intron Class:
major
Intron Phase:
Intron Coordinates:
14542713 - 14572161
Intron Length:
29449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.2
0.79
0.7
81.4
29.4
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030248
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019854
14541756 - 14572718
30963