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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14542713_14578764_F

Intron Information:

Intron Rank:
149232
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
14542713 - 14578764
Intron Length:
36052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GAAAACTTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
ACAAATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
56.3
0.14
1
51.3
42.9
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
57.5
0.31
1.5
69.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030248
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022821
14540117 - 14580986
40870