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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14581261_14588724_R

Intron Information:

Intron Rank:
149803
Intron Class:
major
Intron Phase:
Intron Coordinates:
14581261 - 14588724
Intron Length:
7464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
CCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.7
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.3
0.7
0.7
72.7
32.1
Minor 5ss
35.3
-1.7
3
45.1
42.8
Minor BPS
58.6
0.35
1.9
79.93
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028162
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025309
14580892 - 14589515
8624