About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1458742_1458824_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1458742 - 1458824
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
AATACTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCGTCATTAACT
Flanking Amino Acid:
RLAAKNDIGMSGFSETVTYY
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.1
0.59
0.9
66.3
44.2
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
66.7
0.6
1.7
76.77
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120