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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1458947_1459625_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1458947 - 1459625
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTTTTTTAAAG
Flanking Amino Acid:
ITNFLLEWDEGKNGPFKECY
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.2
0.52
1
73.8
34.3
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
61.9
0.24
1.5
62.12
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120