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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1462333_1462595_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1462333 - 1462595
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TCCCTTTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTATAA
U12 Branch Point Sequence:
AGAGCTGTAACT
Flanking Amino Acid:
GKNGKFKSVYVGEELTITLP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
77
34.4
Major BPS
54.9
0.12
1.2
53
42.8
Major PPT
75.8
0.58
0.7
71.7
26.5
Minor 5ss
45.8
-0.4
2.8
59
45.5
Minor BPS
49.2
0.02
2.1
67.65
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120