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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1467139_1471098_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1467139 - 1471098
Intron Length:
3960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CGTTGCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCTTACGT
Flanking Amino Acid:
IFVPPGYVSQVVEENGVRKV
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.6
0.44
1.1
64.3
41.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
54.1
0.21
2
72.02
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120