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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1472463_1476443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1472463 - 1476443
Intron Length:
3981

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
TACTCTATATTT
Flanking Amino Acid:
HMVNGDSIQQVILVQVNPGE
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
88.3
0.86
0.7
83.9
31.1
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
49.8
0.06
1.8
69.6
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008101
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008485
1449417 - 1476536
27120