About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14749934_14753582_R

Intron Information:

Intron Rank:
144446
Intron Class:
major
Intron Phase:
Intron Coordinates:
14749934 - 14753582
Intron Length:
3649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.4
0.39
1.1
69
40.5
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
63.6
0.5
1.7
80.58
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025000
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020272
14748771 - 14753651
4881