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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14759815_14764787_R

Intron Information:

Intron Rank:
134818
Intron Class:
major
Intron Phase:
Intron Coordinates:
14759815 - 14764787
Intron Length:
4973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.6
0.55
1
68.7
41.7
Minor 5ss
33.3
-1.9
3.5
48.8
47.4
Minor BPS
48.1
-0
1.8
67.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019863
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044525
14759733 - 14791549
31817