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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14764895_14776248_R

Intron Information:

Intron Rank:
134819
Intron Class:
major
Intron Phase:
Intron Coordinates:
14764895 - 14776248
Intron Length:
11354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
85.4
34.1
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019863
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044525
14759733 - 14791549
31817