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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14769477_14776248_R

Intron Information:

Intron Rank:
134817
Intron Class:
major
Intron Phase:
Intron Coordinates:
14769477 - 14776248
Intron Length:
6772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
GTCTCCTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
81
0.7
0.9
72.8
41.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
69.7
0.7
1.5
81.06
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019863
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026595
14769004 - 14776377
7374