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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14776310_14781598_R

Intron Information:

Intron Rank:
134820
Intron Class:
major
Intron Phase:
Intron Coordinates:
14776310 - 14781598
Intron Length:
5289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTCTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
77
0.61
0.9
70.3
40.1
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
50.8
0.1
1.9
74.48
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019863
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044525
14759733 - 14791549
31817