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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14892875_14893651_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14892875 - 14893651
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGCCT
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
ACCACCCTGACT
Flanking Amino Acid:
ERDSSCAEKERSSRSFEMSL
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.3
44.2
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
31.4
-2.1
3.7
47.9
47.8
Minor BPS
51.8
0.14
1.8
67.07
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039219
14891897 - 14898559
6663
ENSAPLT00000038441
14892814 - 14898559
5746
ENSAPLT00000042300
14891897 - 14898559
6663
ENSAPLT00000033825
14891897 - 14898559
6663
ENSAPLT00000040815
14891897 - 14898559
6663
ENSAPLT00000040412
14892814 - 14898559
5746