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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14892875_14893920_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14892875 - 14893920
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
ACCACCCTGACT
Flanking Amino Acid:
ALPLLAIFLCCPPGPLKCPC
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
51.8
0.14
1.8
67.07
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021478
14892786 - 14898559
5774
ENSAPLT00000021265
14892786 - 14898559
5774
ENSAPLT00000030217
14892786 - 14898559
5774