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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14893710_14893920_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14893710 - 14893920
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GTGCCCACGAGC
Flanking Amino Acid:
ALPLLAIFLCYHTTQGWQNE
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
84.4
0.77
0.8
80.1
31.8
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
41
-0.7
2
49.55
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033825
14891897 - 14898559
6663
ENSAPLT00000042300
14891897 - 14898559
6663
ENSAPLT00000040815
14891897 - 14898559
6663
ENSAPLT00000040412
14892814 - 14898559
5746