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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14894014_14894211_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14894014 - 14894211
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
TGTCTGACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTGTCTGACCT
Flanking Amino Acid:
FHIKNIHHRHEDGCTAFVDV
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.3
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.3
0.46
0.9
66.6
39.3
Minor 5ss
28.9
-2.4
2.8
35.8
40.7
Minor BPS
47.4
-0.1
1.9
63.41
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021478
14892786 - 14898559
5774
ENSAPLT00000040815
14891897 - 14898559
6663
ENSAPLT00000021265
14892786 - 14898559
5774
ENSAPLT00000040412
14892814 - 14898559
5746
ENSAPLT00000033825
14891897 - 14898559
6663
ENSAPLT00000030217
14892786 - 14898559
5774