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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14894305_14894497_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14894305 - 14894497
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACGGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCCTTTTCACG
Flanking Amino Acid:
TKLIQLKSTTAQRTMGYTAP
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
1.1
62.9
43.2
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
47.4
-0.3
1.8
51.22
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021478
14892786 - 14898559
5774
ENSAPLT00000040412
14892814 - 14898559
5746
ENSAPLT00000021265
14892786 - 14898559
5774
ENSAPLT00000039219
14891897 - 14898559
6663
ENSAPLT00000033825
14891897 - 14898559
6663
ENSAPLT00000030217
14892786 - 14898559
5774
ENSAPLT00000040815
14891897 - 14898559
6663