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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14894621_14894768_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14894621 - 14894768
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
CAGCCCTGAAAC
Flanking Amino Acid:
TAGLLWMREEGPSIAVILPE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
49.7
-0
1.6
55.65
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038441
14892814 - 14898559
5746
ENSAPLT00000042300
14891897 - 14898559
6663
ENSAPLT00000021478
14892786 - 14898559
5774
ENSAPLT00000040815
14891897 - 14898559
6663
ENSAPLT00000021265
14892786 - 14898559
5774
ENSAPLT00000040412
14892814 - 14898559
5746
ENSAPLT00000039219
14891897 - 14898559
6663