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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14894621_14895403_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14894621 - 14895403
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
CAGCCCTGAAAC
Flanking Amino Acid:
PVCQSEKLRISPSIAVILPE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
49.7
-0
1.6
55.65
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033825
14891897 - 14898559
6663