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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14897602_14897687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14897602 - 14897687
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCACCT
5'SS Class:
major
3'SS Sequence:
TTCTGCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTCCATCT
Flanking Amino Acid:
SPSCPGLLVPLQQAA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.2
56.2
42.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
75.1
0.57
0.9
66.4
39.8
Minor 5ss
33.6
-1.9
3.4
49.2
46.5
Minor BPS
47.6
-0.1
2.1
72.66
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016900
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040412
14892814 - 14898559
5746