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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15018655_15019105_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15018655 - 15019105
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
AACCCACCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAC
U12 Branch Point Sequence:
CTTCCCCCAACC
Flanking Amino Acid:
IRRACLPAPQIQGNIFAGFD
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
48.3
-0.1
1.1
56.1
31
Major PPT
63.7
0.31
0.9
51.9
37.3
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
53.2
0.08
1.9
69.49
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020012
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024799
15018430 - 15020496
2067