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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15058363_15059031_R

Intron Information:

Intron Rank:
151448
Intron Class:
major
Intron Phase:
Intron Coordinates:
15058363 - 15059031
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGTGCACT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1
64.4
41.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.59
1
78.2
28
Minor 5ss
43.1
-0.8
2.8
59
45.3
Minor BPS
54.8
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029045
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035865
15058225 - 15066798
8574