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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15060458_15064321_R

Intron Information:

Intron Rank:
151450
Intron Class:
major
Intron Phase:
Intron Coordinates:
15060458 - 15064321
Intron Length:
3864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTG
5'SS Class:
major
3'SS Sequence:
TATTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TCTTCTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
69.7
43.7
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
85
0.79
0.7
80.5
31.3
Minor 5ss
42.9
-0.8
2.9
56
48.2
Minor BPS
54.3
0.21
1.9
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029045
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035865
15058225 - 15066798
8574