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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15064516_15066427_R

Intron Information:

Intron Rank:
151451
Intron Class:
major
Intron Phase:
Intron Coordinates:
15064516 - 15066427
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTGCCTGATAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.1
25.6
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
38.8
-1.3
3
53.7
43.8
Minor BPS
51.2
0.03
1.9
69.67
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029045
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035865
15058225 - 15066798
8574