About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15095098_15097730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15095098 - 15097730
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTTTCTCCACCC
Flanking Amino Acid:
DSQTKRFPAAGSRPKQRRPM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.5
0.51
0.8
65.5
29.2
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
46.1
-0.3
2.1
62.86
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012679
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013200
15094434 - 15103831
9398