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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15099909_15100433_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15099909 - 15100433
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACGCGTTGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GTGTCCCCACGC
Flanking Amino Acid:
VLSLCALSIDRYRAVASWSR
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
56
0.13
1.1
50.8
42.2
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
40.5
-0.7
2.2
51.98
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012679
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026910
15097731 - 15105045
7315
ENSAPLT00000013200
15094434 - 15103831
9398