Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15102248_15102812_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15102248 - 15102812

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCC

5'SS Class:

major

3'SS Sequence:

CCTCTTGTCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAG

U12 Branch Point Sequence:

GAGCTCCCAGCC

Flanking Amino Acid:

QTDPNRCELLSFLLVMDYFG

Intron Amino Acid Position:

395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

71.5

33.9

Major BPS

44.5

-0.3

1.6

55.8

41.7

Major PPT

77.6

0.62

0.8

75.5

32.9

Minor 5ss

29.1

-2.4

3.7

41.3

45.5

Minor BPS

38.7

-0.8

1.8

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012679

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026910

15097731 - 15105045

7315

ENSAPLT00000013200

15094434 - 15103831

9398