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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15108784_15109327_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15108784 - 15109327
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATTTATC
Flanking Amino Acid:
VCQHVLNTFEKSMKEYRAQK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
49.7
-0
1.9
65.59
39.6

Associated Gene:

Gene:
POLR1D
Ensembl Gene ID:
ENSAPLG00000012757
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013275
15108736 - 15110885
2150