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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15109411_15110395_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15109411 - 15110395
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CCCCCTTTCACT
Flanking Amino Acid:
SKINFRIQTRGSLPAVEPFR
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
51
0.11
1.8
64.23
46.6

Associated Gene:

Gene:
POLR1D
Ensembl Gene ID:
ENSAPLG00000012757
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013275
15108736 - 15110885
2150