Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15110473_15110871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15110473 - 15110871

Intron Length:

399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCTCCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CTGGCCCTCACT

Flanking Amino Acid:

MVMKNPDVQFCGYC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

40.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

82.8

0.74

0.7

77.1

24.8

Minor 5ss

28.4

-2.5

3.1

31.4

36.6

Minor BPS

47.6

-0.1

2.2

67.97

48.6

Associated Gene:

Gene:

POLR1D

Ensembl Gene ID:

ENSAPLG00000012757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013275

15108736 - 15110885

2150