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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15117345_15117907_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15117345 - 15117907
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
ATCTAACTGACT
Flanking Amino Acid:
RIIYLCITDDDFERSRAFNF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
83.5
0.75
0.7
81.6
23.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
46.2
-0.2
2.1
68.82
41.5

Associated Gene:

Gene:
VAMP7
Ensembl Gene ID:
ENSAPLG00000012771
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013304
15114164 - 15124203
10040